species:   Clros
pid:       PID1835
parent:    cro-mir-1
paralog:   
locus:     CADEHS020000002.2:2259339-2259416
matures:   ['UAGAAUUCGGGGUAGAAU', '']
srr:       ERR5960091
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5960091.cram CADEHS020000002.2:2259339-2259416

8851 out of bounds
861 alignments
749 proper strand
739 stranded perfect matches

****************                                          ********************
UACCCCGAAUUCUAUGGCGGCAAUGUGAAUGUUAGGAUCGCGGCAGGUUAGUUGCCGCCAUAGAAUUCGGGGUAGAAU
((((((((((((((((((((((((.....((((........)))).....))))))))))))))))))))))))....
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=677 c
------------------------------------------------------------------------------ l=0 a=0 c*
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=677 ma
------------------------------------------------------------------------------ l=0 a=0 ma*

----CCGAAUUCUAUG-------------------------------------------------------------- l=12 a=1 
-------------AUGGCGGCAAUG----------------------------------------------------- l=12 a=1 
-----------------------------------------------------------AUAGAAUUCGGGGUAGAAU l=19 a=1 
------------------------------------------------------------UAGAAUUCGGGGU----- l=13 a=1 
------------------------------------------------------------UAGAAUUCGGGGUA---- l=14 a=23 
------------------------------------------------------------UAGAAUUCGGGGUAG--- l=15 a=2 
------------------------------------------------------------UAGAAUUCGGGGUAGA-- l=16 a=13 
------------------------------------------------------------UAGAAUUCGGGGUAGAA- l=17 a=19 
------------------------------------------------------------UAGAAUUCGGGGUAGAAU l=18 a=677 (c,ma)
------------------------------------------------------------UAGAAUUCGGGGUAGAAa l=18 a=4 
------------------------------------------------------------UAGAAUUCGGGGcAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUgCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGgAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGAgUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAuAAUUCGGGGUAGAAU l=18 a=1 
------------------------------------------------------------UAGAAUUCGGGGUAGAuU l=18 a=1 
-------------------------------------------------------------AGAAUUCGGGGUAGAAU l=17 a=1 

mb-00110
ax-0011100
ku-11
ss-101011111010
fn-111
